IL_9NJF_152

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9NJF|1|R3|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_152 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1591

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|G|933
9NJF|1|R3|C|934
9NJF|1|R3|A|935
*
9NJF|1|R3|U|1380
9NJF|1|R3|U|1381
9NJF|1|R3|C|1382
9NJF|1|R3|C|1383
9NJF|1|R3|C|1384

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9