IL_9NJF_164
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9NJF|1|R3|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_164 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.1236
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9NJF|1|R3|U|1247
9NJF|1|R3|A|1248
9NJF|1|R3|C|1249
9NJF|1|R3|A|1250
9NJF|1|R3|A|1251
9NJF|1|R3|A|1252
9NJF|1|R3|G|1253
*
9NJF|1|R3|C|1284
9NJF|1|R3|A|1285
9NJF|1|R3|U|1286
9NJF|1|R3|A|1287
9NJF|1|R3|A|1288
9NJF|1|R3|A|1289
9NJF|1|R3|G|1290
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
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