3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCA*UG
Length
5 nucleotides
Bulged bases
9NJV|1|R1|C|995
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_032 not in the Motif Atlas
Homologous match to IL_7A0S_032
Geometric discrepancy: 0.133
The information below is about IL_7A0S_032
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

9NJV|1|R1|C|994
9NJV|1|R1|C|995
9NJV|1|R1|A|996
*
9NJV|1|R1|U|1159
9NJV|1|R1|G|1160

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13
Chain 20
Large ribosomal subunit protein bL20
Chain 21
Large ribosomal subunit protein bL21
Chain 30
50S ribosomal protein L30

Coloring options:


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