IL_9NJV_040

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

9NJV|1|R1|A|1046, 9NJV|1|R1|G|1047

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|C|1043
9NJV|1|R1|C|1044
9NJV|1|R1|C|1045
9NJV|1|R1|A|1046
9NJV|1|R1|G|1047
9NJV|1|R1|A|1048
9NJV|1|R1|C|1049
9NJV|1|R1|A|1050
9NJV|1|R1|G|1051
9NJV|1|R1|C|1052
9NJV|1|R1|C|1053
*
9NJV|1|R1|G|1106
9NJV|1|R1|G|1107
9NJV|1|R1|U|1108
9NJV|1|R1|C|1109
9NJV|1|R1|G|1110
9NJV|1|R1|A|1111
9NJV|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6