IL_9NJV_041

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

9NJV|1|R1|U|1061, 9NJV|1|R1|G|1062, 9NJV|1|R1|C|1064, 9NJV|1|R1|U|1065, 9NJV|1|R1|U|1066, 9NJV|1|R1|A|1067, 9NJV|1|R1|A|1070, 9NJV|1|R1|G|1074, 9NJV|1|R1|U|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|G|1055
9NJV|1|R1|G|1056
9NJV|1|R1|A|1057
9NJV|1|R1|U|1058
9NJV|1|R1|G|1059
9NJV|1|R1|U|1060
9NJV|1|R1|U|1061
9NJV|1|R1|G|1062
9NJV|1|R1|G|1063
9NJV|1|R1|C|1064
9NJV|1|R1|U|1065
9NJV|1|R1|U|1066
9NJV|1|R1|A|1067
9NJV|1|R1|G|1068
9NJV|1|R1|A|1069
9NJV|1|R1|A|1070
9NJV|1|R1|G|1071
9NJV|1|R1|C|1072
9NJV|1|R1|A|1073
9NJV|1|R1|G|1074
9NJV|1|R1|C|1075
9NJV|1|R1|C|1076
9NJV|1|R1|A|1077
9NJV|1|R1|U|1078
9NJV|1|R1|C|1079
9NJV|1|R1|A|1080
9NJV|1|R1|U|1081
9NJV|1|R1|U|1082
9NJV|1|R1|U|1083
9NJV|1|R1|A|1084
9NJV|1|R1|A|1085
9NJV|1|R1|A|1086
9NJV|1|R1|G|1087
9NJV|1|R1|A|1088
9NJV|1|R1|A|1089
9NJV|1|R1|A|1090
*
9NJV|1|R1|U|1101
9NJV|1|R1|C|1102
9NJV|1|R1|A|1103
9NJV|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36