IL_9NJV_042

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACG*UGCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_042 not in the Motif Atlas

Homologous match to IL_4WF9_043

Geometric discrepancy: 0.3197

The information below is about IL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|A|1169
9NJV|1|R1|C|1170
9NJV|1|R1|G|1171
*
9NJV|1|R1|U|1176
9NJV|1|R1|G|1177
9NJV|1|R1|C|1178
9NJV|1|R1|G|1179
9NJV|1|R1|U|1180

Current chains

Chain R1

23S ribosomal RNA

Nearby chains