3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
ACG*UGCGU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_042 not in the Motif Atlas
Homologous match to IL_4WF9_043
Geometric discrepancy: 0.3197
The information below is about IL_4WF9_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NJV|1|R1|A|1169
9NJV|1|R1|C|1170
9NJV|1|R1|G|1171
*
9NJV|1|R1|U|1176
9NJV|1|R1|G|1177
9NJV|1|R1|C|1178
9NJV|1|R1|G|1179
9NJV|1|R1|U|1180

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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