IL_9NJV_046

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_046 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1037

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NJV|1|R1|A|1262
9NJV|1|R1|U|1263
9NJV|1|R1|A|1264
9NJV|1|R1|A|1265
9NJV|1|R1|G|1266
9NJV|1|R1|U|1267
9NJV|1|R1|A|1268
9NJV|1|R1|A|1269
*
9NJV|1|R1|U|2011
9NJV|1|R1|G|2012
9NJV|1|R1|A|2013
9NJV|1|R1|A|2014
9NJV|1|R1|A|2015
9NJV|1|R1|U|2016
9NJV|1|R1|U|2017

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32

Chain 4

Large ribosomal subunit protein uL4