3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UG*CAUCAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_052 not in the Motif Atlas
Homologous match to IL_5J7L_294
Geometric discrepancy: 0.5839
The information below is about IL_5J7L_294
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_87211.1
Basepair signature
cWW-cSW-L-cWW-L
Number of instances in this motif group
1

Unit IDs

9NJV|1|R1|U|1415
9NJV|1|R1|G|1416
*
9NJV|1|R1|C|1582
9NJV|1|R1|A|1583
9NJV|1|R1|U|1584
9NJV|1|R1|C|1585
9NJV|1|R1|A|1586
9NJV|1|R1|G|1587

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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