IL_9NJV_053

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9NJV|1|R1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_053 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.2256

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9NJV|1|R1|C|1417
9NJV|1|R1|G|1418
9NJV|1|R1|A|1419
9NJV|1|R1|A|1420
9NJV|1|R1|G|1421
*
9NJV|1|R1|C|1577
9NJV|1|R1|U|1578
9NJV|1|R1|A|1579
9NJV|1|R1|A|1580
9NJV|1|R1|G|1581

Current chains

Chain R1

23S ribosomal RNA

Nearby chains