IL_9NJV_064

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_064 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.1285

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9NJV|1|R1|G|1666
9NJV|1|R1|G|1667
9NJV|1|R1|A|1668
9NJV|1|R1|A|1669
*
9NJV|1|R1|U|1993
9NJV|1|R1|C|1994

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3