IL_9NJV_065

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_065 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0993

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9NJV|1|R1|G|1666
9NJV|1|R1|G|1667
9NJV|1|R1|A|1668
9NJV|1|R1|A|1669
9NJV|1|R1|C|1670
9NJV|1|R1|U|1671
9NJV|1|R1|A|1672
9NJV|1|R1|G|1673
9NJV|1|R1|G|1674
*
9NJV|1|R1|C|1990
9NJV|1|R1|U|1991
9NJV|1|R1|G|1992
9NJV|1|R1|U|1993
9NJV|1|R1|C|1994

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3