IL_9NJV_068

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9NJV|1|R1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1628

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NJV|1|R1|U|1712
9NJV|1|R1|A|1713
9NJV|1|R1|U|1714
9NJV|1|R1|G|1715
9NJV|1|R1|U|1716
9NJV|1|R1|A|1717
9NJV|1|R1|G|1718
*
9NJV|1|R1|U|1742
9NJV|1|R1|G|1743
9NJV|1|R1|A|1744
9NJV|1|R1|A|1745
9NJV|1|R1|A|1746

Current chains

Chain R1

23S ribosomal RNA

Nearby chains