IL_9NJV_087

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGUGUAG*CUUGAAAUACCACCCUU

Length

25 nucleotides

Bulged bases

9NJV|1|R1|U|2111, 9NJV|1|R1|U|2172, 9NJV|1|R1|A|2173, 9NJV|1|R1|C|2174, 9NJV|1|R1|C|2175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJV|1|R1|A|2108
9NJV|1|R1|U|2109
9NJV|1|R1|G|2110
9NJV|1|R1|U|2111
9NJV|1|R1|G|2112
9NJV|1|R1|U|2113
9NJV|1|R1|A|2114
9NJV|1|R1|G|2115
*
9NJV|1|R1|C|2165
9NJV|1|R1|U|2166
9NJV|1|R1|U|2167
9NJV|1|R1|G|2168
9NJV|1|R1|A|2169
9NJV|1|R1|A|2170
9NJV|1|R1|A|2171
9NJV|1|R1|U|2172
9NJV|1|R1|A|2173
9NJV|1|R1|C|2174
9NJV|1|R1|C|2175
9NJV|1|R1|A|2176
9NJV|1|R1|C|2177
9NJV|1|R1|C|2178
9NJV|1|R1|C|2179
9NJV|1|R1|U|2180
9NJV|1|R1|U|2181

Current chains

Chain R1

23S ribosomal RNA

Nearby chains