IL_9NJV_091

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_091 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1177

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9NJV|1|R1|C|2350
9NJV|1|R1|G|2351
9NJV|1|R1|A|2352
9NJV|1|R1|G|2353
*
9NJV|1|R1|C|2364
9NJV|1|R1|G|2365
9NJV|1|R1|A|2366
9NJV|1|R1|G|2367

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 27

Large ribosomal subunit protein bL27

Chain 35

Large ribosomal subunit protein bL35