IL_9NJV_100
3D structure
- PDB id
- 9NJV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex (bL33 absent)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 9NJV|1|R1|A|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJV_100 not in the Motif Atlas
- Homologous match to IL_7A0S_091
- Geometric discrepancy: 0.1306
- The information below is about IL_7A0S_091
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
9NJV|1|R1|U|2522
9NJV|1|R1|G|2523
*
9NJV|1|R1|C|2540
9NJV|1|R1|A|2541
9NJV|1|R1|A|2542
9NJV|1|R1|G|2543
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL13
- Chain 36
- 50S ribosomal protein L36
Coloring options: