3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
9NJV|1|R1|A|2542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_100 not in the Motif Atlas
Homologous match to IL_7A0S_091
Geometric discrepancy: 0.1306
The information below is about IL_7A0S_091
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

9NJV|1|R1|U|2522
9NJV|1|R1|G|2523
*
9NJV|1|R1|C|2540
9NJV|1|R1|A|2541
9NJV|1|R1|A|2542
9NJV|1|R1|G|2543

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13
Chain 36
50S ribosomal protein L36

Coloring options:


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