IL_9NJV_103

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_103 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.342

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9NJV|1|R1|C|2651
9NJV|1|R1|C|2652
9NJV|1|R1|U|2653
9NJV|1|R1|A|2654
9NJV|1|R1|G|2655
9NJV|1|R1|U|2656
9NJV|1|R1|A|2657
9NJV|1|R1|C|2658
*
9NJV|1|R1|G|2663
9NJV|1|R1|G|2664
9NJV|1|R1|A|2665
9NJV|1|R1|C|2666
9NJV|1|R1|C|2667
9NJV|1|R1|G|2668
9NJV|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6