IL_9NJV_126

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_126 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1779

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

9NJV|1|R3|C|132
9NJV|1|R3|U|133
9NJV|1|R3|G|134
9NJV|1|R3|C|135
9NJV|1|R3|C|136
*
9NJV|1|R3|G|227
9NJV|1|R3|A|228
9NJV|1|R3|U|229
9NJV|1|R3|G|230

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20