IL_9NJV_141

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9NJV|1|R3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_141 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1494

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9NJV|1|R3|C|569
9NJV|1|R3|G|570
9NJV|1|R3|U|571
9NJV|1|R3|A|572
9NJV|1|R3|A|573
9NJV|1|R3|A|574
9NJV|1|R3|G|575
*
9NJV|1|R3|C|880
9NJV|1|R3|G|881

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17