3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_169 not in the Motif Atlas
Geometric match to IL_4V9F_085
Geometric discrepancy: 0.2823
The information below is about IL_4V9F_085
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9NJV|1|R3|C|1259
9NJV|1|R3|G|1260
9NJV|1|R3|A|1261
9NJV|1|R3|C|1262
9NJV|1|R3|C|1263
*
9NJV|1|R3|G|1272
9NJV|1|R3|C|1273
9NJV|1|R3|A|1274
9NJV|1|R3|A|1275
9NJV|1|R3|G|1276

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sn
Small ribosomal subunit protein uS14
Chain ss
30S ribosomal protein S19

Coloring options:


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