IL_9NJV_179

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9NJV|1|R3|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJV_179 not in the Motif Atlas

Geometric match to IL_8VMA_003

Geometric discrepancy: 0.2472

The information below is about IL_8VMA_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9NJV|1|R3|U|1440
9NJV|1|R3|A|1441
9NJV|1|R3|G|1442
*
9NJV|1|R3|C|1460
9NJV|1|R3|G|1461

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain st

30S ribosomal protein S20