IL_9NKL_007

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_007 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0839

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9NKL|1|R1|G|188
9NKL|1|R1|G|189
9NKL|1|R1|A|190
9NKL|1|R1|A|191
9NKL|1|R1|C|192
9NKL|1|R1|U|193
9NKL|1|R1|G|194
*
9NKL|1|R1|C|201
9NKL|1|R1|U|202
9NKL|1|R1|A|203
9NKL|1|R1|A|204
9NKL|1|R1|G|205
9NKL|1|R1|U|206
9NKL|1|R1|A|207
9NKL|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28