IL_9NKL_008

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_008 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2328

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9NKL|1|R1|C|239
9NKL|1|R1|C|240
9NKL|1|R1|A|241
9NKL|1|R1|G|242
9NKL|1|R1|U|243
9NKL|1|R1|A|244
9NKL|1|R1|G|245
*
9NKL|1|R1|C|253
9NKL|1|R1|G|254
9NKL|1|R1|A|255
9NKL|1|R1|A|256
9NKL|1|R1|C|257
9NKL|1|R1|G|258

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 35

Large ribosomal subunit protein bL35