IL_9NKL_013

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_013 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.1175

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9NKL|1|R1|C|564
9NKL|1|R1|C|565
9NKL|1|R1|U|566
*
9NKL|1|R1|A|575
9NKL|1|R1|U|576
9NKL|1|R1|G|577

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 20

Large ribosomal subunit protein bL20

Chain 21

Large ribosomal subunit protein bL21

Chain 32

50S ribosomal protein L32

Chain 4

Large ribosomal subunit protein uL4