IL_9NKL_016

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NKL|1|R1|G|801, 9NKL|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1229

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NKL|1|R1|G|674
9NKL|1|R1|A|675
9NKL|1|R1|A|676
9NKL|1|R1|A|677
9NKL|1|R1|C|678
*
9NKL|1|R1|G|799
9NKL|1|R1|A|800
9NKL|1|R1|G|801
9NKL|1|R1|A|802
9NKL|1|R1|U|803
9NKL|1|R1|A|804
9NKL|1|R1|G|805
9NKL|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4