3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
9NKL|1|R1|G|776, 9NKL|1|R1|A|788, 9NKL|1|R1|A|789, 9NKL|1|R1|U|790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NKL_021 not in the Motif Atlas
Geometric match to IL_5J7L_265
Geometric discrepancy: 0.0762
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

9NKL|1|R1|G|775
9NKL|1|R1|G|776
9NKL|1|R1|G|777
*
9NKL|1|R1|C|787
9NKL|1|R1|A|788
9NKL|1|R1|A|789
9NKL|1|R1|U|790
9NKL|1|R1|C|791

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2
Chain 22
Large ribosomal subunit protein uL22
Chain 34
50S ribosomal protein L34

Coloring options:


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