IL_9NKL_021

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9NKL|1|R1|G|776, 9NKL|1|R1|A|788, 9NKL|1|R1|A|789, 9NKL|1|R1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0762

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NKL|1|R1|G|775
9NKL|1|R1|G|776
9NKL|1|R1|G|777
*
9NKL|1|R1|C|787
9NKL|1|R1|A|788
9NKL|1|R1|A|789
9NKL|1|R1|U|790
9NKL|1|R1|C|791

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34