IL_9NKL_042

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9NKL|1|R1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1102

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9NKL|1|R1|C|1208
9NKL|1|R1|U|1209
9NKL|1|R1|G|1210
9NKL|1|R1|C|1211
9NKL|1|R1|G|1212
9NKL|1|R1|A|1213
9NKL|1|R1|A|1214
9NKL|1|R1|G|1215
*
9NKL|1|R1|U|1234
9NKL|1|R1|G|1235
9NKL|1|R1|G|1236
9NKL|1|R1|A|1237
9NKL|1|R1|G|1238

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20