IL_9NKL_052

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9NKL|1|R1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_052 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9NKL|1|R1|C|1437
9NKL|1|R1|U|1438
9NKL|1|R1|A|1439
9NKL|1|R1|U|1440
*
9NKL|1|R1|A|1551
9NKL|1|R1|A|1552
9NKL|1|R1|A|1553
9NKL|1|R1|U|1554
9NKL|1|R1|G|1555

Current chains

Chain R1

23S ribosomal RNA

Nearby chains