IL_9NKL_062

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_062 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9NKL|1|R1|G|1666
9NKL|1|R1|G|1667
9NKL|1|R1|A|1668
9NKL|1|R1|A|1669
9NKL|1|R1|C|1670
9NKL|1|R1|U|1671
9NKL|1|R1|A|1672
9NKL|1|R1|G|1673
9NKL|1|R1|G|1674
*
9NKL|1|R1|C|1990
9NKL|1|R1|U|1991
9NKL|1|R1|G|1992
9NKL|1|R1|U|1993
9NKL|1|R1|C|1994

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3