IL_9NKL_068

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9NKL|1|R1|A|1801, 9NKL|1|R1|C|1816, 9NKL|1|R1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1021

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9NKL|1|R1|U|1798
9NKL|1|R1|G|1799
9NKL|1|R1|C|1800
9NKL|1|R1|A|1801
9NKL|1|R1|A|1802
9NKL|1|R1|A|1803
9NKL|1|R1|C|1804
*
9NKL|1|R1|G|1813
9NKL|1|R1|G|1814
9NKL|1|R1|A|1815
9NKL|1|R1|C|1816
9NKL|1|R1|G|1817
9NKL|1|R1|U|1818
9NKL|1|R1|A|1819
9NKL|1|R1|U|1820
9NKL|1|R1|A|1821

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA