3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NKL_093 not in the Motif Atlas
Homologous match to IL_7A0S_087
Geometric discrepancy: 0.1488
The information below is about IL_7A0S_087
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9NKL|1|R1|C|2466
9NKL|1|R1|C|2467
9NKL|1|R1|A|2468
9NKL|1|R1|A|2469
9NKL|1|R1|G|2470
*
9NKL|1|R1|C|2480
9NKL|1|R1|G|2481
9NKL|1|R1|A|2482
9NKL|1|R1|C|2483
9NKL|1|R1|G|2484

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain 36
50S ribosomal protein L36

Coloring options:


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