IL_9NKL_093

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_093 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1488

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9NKL|1|R1|C|2466
9NKL|1|R1|C|2467
9NKL|1|R1|A|2468
9NKL|1|R1|A|2469
9NKL|1|R1|G|2470
*
9NKL|1|R1|C|2480
9NKL|1|R1|G|2481
9NKL|1|R1|A|2482
9NKL|1|R1|C|2483
9NKL|1|R1|G|2484

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 36

50S ribosomal protein L36