IL_9NKL_109

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_109 not in the Motif Atlas

Homologous match to IL_4WF9_121

Geometric discrepancy: 0.3169

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9NKL|1|R2|G|2
9NKL|1|R2|C|3
9NKL|1|R2|C|4
*
9NKL|1|R2|G|116
9NKL|1|R2|G|117
9NKL|1|R2|C|118

Current chains

Chain R2

5S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18