IL_9NKL_124

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9NKL|1|R3|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1608

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9NKL|1|R3|G|147
9NKL|1|R3|G|148
9NKL|1|R3|A|149
9NKL|1|R3|U|150
9NKL|1|R3|A|151
9NKL|1|R3|A|152
9NKL|1|R3|C|153
*
9NKL|1|R3|G|168
9NKL|1|R3|C|169
9NKL|1|R3|U|170
9NKL|1|R3|A|171
9NKL|1|R3|A|172
9NKL|1|R3|U|173
9NKL|1|R3|A|174
9NKL|1|R3|C|175

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20