IL_9NKL_125

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NKL|1|R3|U|244, 9NKL|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_125 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1342

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9NKL|1|R3|G|242
9NKL|1|R3|A|243
9NKL|1|R3|U|244
9NKL|1|R3|U|245
9NKL|1|R3|A|246
9NKL|1|R3|G|247
*
9NKL|1|R3|C|277
9NKL|1|R3|G|278
9NKL|1|R3|A|279
9NKL|1|R3|C|280
9NKL|1|R3|G|281
9NKL|1|R3|A|282
9NKL|1|R3|U|283
9NKL|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17