IL_9NKL_132

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_132 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.382

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9NKL|1|R3|C|440
9NKL|1|R3|A|441
9NKL|1|R3|G|442
*
9NKL|1|R3|C|492
9NKL|1|R3|A|493
9NKL|1|R3|G|494
9NKL|1|R3|A|495
9NKL|1|R3|A|496
9NKL|1|R3|G|497

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4