IL_9NKL_134

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_134 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.139

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9NKL|1|R3|G|450
9NKL|1|R3|A|451
9NKL|1|R3|A|452
9NKL|1|R3|G|453
9NKL|1|R3|G|454
9NKL|1|R3|G|455
*
9NKL|1|R3|C|477
9NKL|1|R3|A|478
9NKL|1|R3|U|479
9NKL|1|R3|U|480
9NKL|1|R3|G|481
9NKL|1|R3|A|482
9NKL|1|R3|C|483

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16