IL_9NKL_136

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9NKL|1|R3|A|532, 9NKL|1|R3|U|534, 9NKL|1|R3|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_136 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.2762

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NKL|1|R3|G|515
9NKL|1|R3|U|516
9NKL|1|R3|G|517
9NKL|1|R3|C|518
9NKL|1|R3|C|519
9NKL|1|R3|A|520
9NKL|1|R3|G|521
*
9NKL|1|R3|C|528
9NKL|1|R3|G|529
9NKL|1|R3|G|530
9NKL|1|R3|U|531
9NKL|1|R3|A|532
9NKL|1|R3|A|533
9NKL|1|R3|U|534
9NKL|1|R3|A|535
9NKL|1|R3|C|536

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain sc

Small ribosomal subunit protein uS3

Chain sl

Small ribosomal subunit protein uS12