IL_9NKL_144

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9NKL|1|R3|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_144 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0892

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9NKL|1|R3|U|662
9NKL|1|R3|A|663
9NKL|1|R3|G|664
9NKL|1|R3|A|665
9NKL|1|R3|G|666
*
9NKL|1|R3|U|740
9NKL|1|R3|G|741
9NKL|1|R3|G|742
9NKL|1|R3|A|743

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sf

30S ribosomal protein S6, non-modified isoform

Chain so

Small ribosomal subunit protein uS15

Chain sr

30S ribosomal protein S18