IL_9NKL_148

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_148 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0971

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9NKL|1|R3|C|779
9NKL|1|R3|A|780
9NKL|1|R3|A|781
9NKL|1|R3|A|782
9NKL|1|R3|C|783
*
9NKL|1|R3|G|799
9NKL|1|R3|G|800
9NKL|1|R3|U|801
9NKL|1|R3|A|802
9NKL|1|R3|G|803

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sk

Small ribosomal subunit protein uS11

Chain su

Small ribosomal subunit protein bS21