3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
9NKL|1|R3|U|1126
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NKL_160 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1542
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

9NKL|1|R3|G|1124
9NKL|1|R3|U|1125
9NKL|1|R3|U|1126
9NKL|1|R3|G|1127
9NKL|1|R3|C|1128
*
9NKL|1|R3|G|1144
9NKL|1|R3|A|1145
9NKL|1|R3|A|1146
9NKL|1|R3|C|1147
9NKL|1|R3|U|1148
9NKL|1|R3|C|1149

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain si
Small ribosomal subunit protein uS9
Chain sj
30S ribosomal protein S10

Coloring options:


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