IL_9NKL_174

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_174 not in the Motif Atlas

Geometric match to IL_4WF9_121

Geometric discrepancy: 0.2209

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9NKL|1|R3|G|1438
9NKL|1|R3|G|1439
9NKL|1|R3|U|1440
*
9NKL|1|R3|G|1461
9NKL|1|R3|C|1462
9NKL|1|R3|U|1463

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain st

30S ribosomal protein S20