IL_9NL5_005

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_005 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1418

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9NL5|1|R1|U|153
9NL5|1|R1|U|154
9NL5|1|R1|A|155
*
9NL5|1|R1|U|170
9NL5|1|R1|U|171
9NL5|1|R1|A|172

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28