IL_9NL5_018

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NL5|1|R1|G|801, 9NL5|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0744

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NL5|1|R1|G|674
9NL5|1|R1|A|675
9NL5|1|R1|A|676
9NL5|1|R1|A|677
9NL5|1|R1|C|678
*
9NL5|1|R1|G|799
9NL5|1|R1|A|800
9NL5|1|R1|G|801
9NL5|1|R1|A|802
9NL5|1|R1|U|803
9NL5|1|R1|A|804
9NL5|1|R1|G|805
9NL5|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 4

Large ribosomal subunit protein uL4