IL_9NL5_064

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9NL5|1|R1|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_064 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0652

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9NL5|1|R1|A|1669
9NL5|1|R1|C|1670
9NL5|1|R1|U|1671
9NL5|1|R1|A|1672
9NL5|1|R1|G|1673
9NL5|1|R1|G|1674
*
9NL5|1|R1|C|1990
9NL5|1|R1|U|1991
9NL5|1|R1|G|1992
9NL5|1|R1|U|1993

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3