IL_9NL5_155

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_155 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0832

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NL5|1|R3|G|887
9NL5|1|R3|G|888
9NL5|1|R3|A|889
9NL5|1|R3|G|890
9NL5|1|R3|U|891
9NL5|1|R3|A|892
9NL5|1|R3|C|893
9NL5|1|R3|G|894
*
9NL5|1|R3|U|905
9NL5|1|R3|A|906
9NL5|1|R3|A|907
9NL5|1|R3|A|908
9NL5|1|R3|A|909
9NL5|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain sl

Small ribosomal subunit protein uS12