IL_9NL5_158

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9NL5|1|R3|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_158 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1554

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9NL5|1|R3|G|933
9NL5|1|R3|C|934
9NL5|1|R3|A|935
*
9NL5|1|R3|U|1380
9NL5|1|R3|U|1381
9NL5|1|R3|C|1382
9NL5|1|R3|C|1383
9NL5|1|R3|C|1384

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9