IL_9NL5_172

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_172 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1158

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9NL5|1|R3|C|1303
9NL5|1|R3|G|1304
9NL5|1|R3|G|1305
9NL5|1|R3|A|1306
9NL5|1|R3|U|1307
9NL5|1|R3|U|1308
*
9NL5|1|R3|A|1329
9NL5|1|R3|U|1330
9NL5|1|R3|G|1331
9NL5|1|R3|A|1332
9NL5|1|R3|A|1333
9NL5|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

Small ribosomal subunit protein uS13