IL_9NL6_016

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NL6|1|R1|G|801, 9NL6|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0862

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NL6|1|R1|G|674
9NL6|1|R1|A|675
9NL6|1|R1|A|676
9NL6|1|R1|A|677
9NL6|1|R1|C|678
*
9NL6|1|R1|G|799
9NL6|1|R1|A|800
9NL6|1|R1|G|801
9NL6|1|R1|A|802
9NL6|1|R1|U|803
9NL6|1|R1|A|804
9NL6|1|R1|G|805
9NL6|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4