IL_9NL6_021

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9NL6|1|R1|G|776, 9NL6|1|R1|A|788, 9NL6|1|R1|A|789, 9NL6|1|R1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0806

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NL6|1|R1|G|775
9NL6|1|R1|G|776
9NL6|1|R1|G|777
*
9NL6|1|R1|C|787
9NL6|1|R1|A|788
9NL6|1|R1|A|789
9NL6|1|R1|U|790
9NL6|1|R1|C|791

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34