IL_9NL6_022

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

9NL6|1|R1|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_022 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.1919

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9NL6|1|R1|A|844
9NL6|1|R1|A|845
9NL6|1|R1|U|846
9NL6|1|R1|U|847
*
9NL6|1|R1|A|933
9NL6|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30