IL_9NL6_069

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_069 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1282

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9NL6|1|R1|U|1720
9NL6|1|R1|G|1721
9NL6|1|R1|A|1722
9NL6|1|R1|G|1723
9NL6|1|R1|G|1724
*
9NL6|1|R1|U|1736
9NL6|1|R1|G|1737
9NL6|1|R1|G|1738
9NL6|1|R1|A|1739
9NL6|1|R1|G|1740

Current chains

Chain R1

23S ribosomal RNA

Nearby chains